Repository revision

Revision: 1:5a4b00c84f50

Repository 'rnabob'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/rnateam/rnabob

RNABOB tool metadata

Miscellaneous

Name: RNABOB

Description: Fast Pattern searching for RNA secondary structures

Id: rbc_rnabob

Guid: toolshed.g2.bx.psu.edu/repos/rnateam/rnabob/rbc_rnabob/2.2.1.0

Version: 2.2.1.0

Version command string: echo "2.2.1"

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/rnateam/rnabob/rbc_rnabob/2.2.1.0 (this tool)

rbc_rnabob

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

rnabob

2.2.1

package

Additional information about this tool

Command:

rnabob
        -q
        $fancy
        $compStrands
        $skipOverlapping
        $descriptorFile
        $sequenceFile > $stdout

Interpreter: None

Forces a history refresh: False

Functional tests

name

inputs

outputs

required files

Test-1

skipOverlapping: False
descriptorFile: r17.des
sequenceFile: F22B7.fa
fancy: False
compStrands: True

stdout: r17.bob

r17.des
F22B7.fa
r17.bob

Test-2

skipOverlapping: False
descriptorFile: trna.des
sequenceFile: F22B7.fa
fancy: False
compStrands: True

stdout: trna.bob

trna.des
F22B7.fa
trna.bob