Repository revision
0:f92fcdde48fc

Repository 'ctat_metagenomics'
hg clone https://toolshed.g2.bx.psu.edu/repos/trinity_ctat/ctat_metagenomics

ctat_metagenomics tool metadata
Miscellaneous
Centrifuge classifier for metagenomic sequences (RNA-Seq)
ctat_metagenomics
toolshed.g2.bx.psu.edu/repos/trinity_ctat/ctat_metagenomics/ctat_metagenomics/1.0.0
1.0.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/trinity_ctat/ctat_metagenomics/ctat_metagenomics/1.0.0 (this tool)
ctat_metagenomics
Requirements (dependencies defined in the <requirements> tag set)
name version type
centrifuge 1.0.3=py27pl5.22.0_2 package
ctat-metagenomics 1.0.1 package
Functional tests
name inputs outputs required files
Test-1 format_type|read_type|left_fq_single: centrifuge/SRR2219890_1.adj.fastq
format_type|format: fastq
format_type|read_type|type: single
index: /N/dc2/projects/galaxyshared/trinity/dev/Trinity_CTAT/metagenomics/phv
attributes: name
attributes: name
attributes: name
centrifuge/SRR2219890_1.adj.fastq
name