Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_segmentations/cardinal_segmentations/2.4.0.0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_segmentations/cardinal_segmentations/1.12.1.3 (this tool) |
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_segmentations/cardinal_segmentations/1.12.1.2 |
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_segmentations/cardinal_segmentations/1.12.1.1 |
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_segmentations/cardinal_segmentations/1.12.1.0 |
cardinal_segmentations |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
bioconductor-cardinal | 1.12.1 | package |
r-base | 3.5.1 | package |
r-gridextra | 2.3 | package |
r-lattice | 0.20_35 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
image_type: False colours_1|feature_color: #0000FF colours_0|feature_color: #ff00ff infile: segm_cond|segmentationtool: pca |
attributes: name attributes: name attributes: name |
name |
Test-2 |
output_rdata: True segm_cond|kmeans_toplabels: 20 segm_cond|kmeans_k: 2,3 segm_cond|segmentationtool: kmeans colours_1|feature_color: #0000FF segm_cond|kmeans_r: 1:3 colours_2|feature_color: #00C957 colours_0|feature_color: #ff00ff infile: |
attributes: name attributes: name attributes: name attributes: name |
name |
Test-3 |
segm_cond|centroids_r: 1,2 colours_4|feature_color: #848484 colours_3|feature_color: #FFD700 colours_1|feature_color: #00C957 segm_cond|centroids_k: 3 segm_cond|centroids_toplabels: 50 colours_2|feature_color: #B0171F segm_cond|segmentationtool: centroids colours_0|feature_color: #0000FF infile: preprocessed.RData |
attributes: name attributes: name attributes: name |
preprocessed.RData name |