Repository revision
1:b955346ef41e

Repository 'bbtools_callvariants'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/bbtools_callvariants

BBTools: call variants tool metadata
Miscellaneous
in aligned Bam files
bbtools_callvariants
toolshed.g2.bx.psu.edu/repos/iuc/bbtools_callvariants/bbtools_callvariants/1.0.0+galaxy1.0.0
1.0.0+galaxy1.0.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/bbtools_callvariants/bbtools_callvariants/1.0.0+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/bbtools_callvariants/bbtools_callvariants/1.0.0+galaxy1.0.0 (this tool)
bbtools_callvariants
Requirements (dependencies defined in the <requirements> tag set)
name version type
bbmap 38.92 package
Functional tests
name inputs outputs required files
Test-1 input: cv_input.bam
ploidy: 2
output_variant_score_hist: True
output_zygosity_hist: True
output_quality_hist: True
name: value
name: value
name: value
name: value
cv_input.bam
value
Test-2 input: cv_input.bam
ploidy: 2
output_format: gff
name: value
cv_input.bam
value
Test-3 input: cv_input.bam
ploidy: 2
output_format: txt
name: value
cv_input.bam
value