Repository revision
2:12c40c8c86db

Repository 'medaka_consensus'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus

medaka: Consensus tool metadata
Miscellaneous
Assembly polishing via neural networks
medaka_consensus
toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus/medaka_consensus/1.0.1+galaxy1
1.0.1+galaxy1
medaka --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus/medaka_consensus/1.0.3+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus/medaka_consensus/1.0.1+galaxy1 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus/medaka_consensus/1.0.1+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus/medaka_consensus/0.11.5
medaka_consensus
Requirements (dependencies defined in the <requirements> tag set)
name version type
medaka 1.0.1 package
Functional tests
name inputs outputs required files
Test-1 bam: alignment.bam
attributes: name
alignment.bam
name
Test-2 disable_cudnn: True
chunk_len: 9999
chunk_ovlp: 999
batch_size: 99
check_output: True
tag_keep_missing: True
save_features: True
model: r941_min_fast_g303
bam: alignment.bam
out: ['result', 'log']
attributes: name
attributes: name
alignment.bam
name