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medaka consensus tool tool metadata

Miscellaneous

Name: medaka consensus tool

Description: Assembly polishing via neural networks

Id: medaka_consensus

Guid: toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus/medaka_consensus/1.7.2+galaxy0

Version: 1.7.2+galaxy0

Version command string: medaka --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus/medaka_consensus/2.1.1+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus/medaka_consensus/1.7.2+galaxy0 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus/medaka_consensus/1.4.4+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus/medaka_consensus/1.3.2+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus/medaka_consensus/1.0.3+galaxy2

toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus/medaka_consensus/1.0.3+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus/medaka_consensus/1.0.1+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus/medaka_consensus/1.0.1+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus/medaka_consensus/0.11.5

medaka_consensus

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

medaka

1.7.2

package

Functional tests

name

inputs

outputs

required files

Test-1

bam: alignment.bam

name: value

alignment.bam
value

Test-2

bam: alignment.bam
model: r941_min_fast_g303
batch_size: 99
chunk_len: 9999
chunk_ovlp: 999
check_output: True
save_features: True
tag_keep_missing: True
out: ['result', 'log']

name: value
name: value

alignment.bam
value