Repository revision
10:db25ec99c3ea

Repository 'medaka_consensus'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus

medaka consensus tool tool metadata
Miscellaneous
Assembly polishing via neural networks
medaka_consensus
toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus/medaka_consensus/1.0.3+galaxy2
1.0.3+galaxy2
medaka --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus/medaka_consensus/1.3.2+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus/medaka_consensus/1.0.3+galaxy2 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus/medaka_consensus/1.0.3+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus/medaka_consensus/1.0.1+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus/medaka_consensus/1.0.1+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus/medaka_consensus/0.11.5
medaka_consensus
Requirements (dependencies defined in the <requirements> tag set)
name version type
medaka 1.0.3 package
Functional tests
name inputs outputs required files
Test-1 bam: alignment.bam
name: value
alignment.bam
value
Test-2 bam: alignment.bam
model: r941_min_fast_g303
batch_size: 99
chunk_len: 9999
chunk_ovlp: 999
disable_cudnn: True
check_output: True
save_features: True
tag_keep_missing: True
out: ['result', 'log']
name: value
name: value
alignment.bam
value