Galaxy |

dada2: dada tool metadata

Miscellaneous

Name: dada2: dada

Description: Remove sequencing errors

Id: dada2_dada

Guid: toolshed.g2.bx.psu.edu/repos/iuc/dada2_dada/dada2_dada/1.18+galaxy0

Version: 1.18+galaxy0

Version command string: echo $(R --version | grep version | grep -v GNU)", dada2 version" $(R --vanilla --slave -e "library(dada2); cat(sessionInfo()\$otherPkgs\$dada2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/dada2_dada/dada2_dada/1.20+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_dada/dada2_dada/1.18+galaxy0 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/dada2_dada/dada2_dada/1.16+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_dada/dada2_dada/1.14+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_dada/dada2_dada/1.12+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/dada2_dada/dada2_dada/1.12+galaxy0

dada2_dada

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

bioconductor-dada2

1.18

package

Functional tests

name

inputs

outputs

required files

Test-1

batch_cond|derep: ['filterAndTrim_F3D0_R1.fq.gz', 'filterAndTrim_F3D141_R1.fq.gz']
batch_cond|batch_select: no
err: learnErrors_R1.Rdata

filterAndTrim_F3D0_R1.fq.gz
filterAndTrim_F3D141_R1.fq.gz
learnErrors_R1.Rdata

Test-2

batch_cond|derep: filterAndTrim_F3D0_R1.fq.gz
batch_cond|batch_select: yes
err: learnErrors_R1.Rdata

name: value

filterAndTrim_F3D0_R1.fq.gz
learnErrors_R1.Rdata
value

Test-3

batch_cond|derep: filterAndTrim_F3D0_R1.fq.gz
batch_cond|pool: pseudo
batch_cond|batch_select: no
err: learnErrors_R1.Rdata

filterAndTrim_F3D0_R1.fq.gz
learnErrors_R1.Rdata