Repository revision
1:6b4ddc3b64bd

Repository 'dada2_dada'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/dada2_dada

dada2: dada tool metadata
Miscellaneous
dada2: dada
Remove sequencing errors
dada2_dada
toolshed.g2.bx.psu.edu/repos/iuc/dada2_dada/dada2_dada/1.12+galaxy1
1.12+galaxy1
echo $(R --version | grep version | grep -v GNU)", dada2 version" $(R --vanilla --slave -e "library(dada2); cat(sessionInfo()\$otherPkgs\$dada2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/dada2_dada/dada2_dada/1.14+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/dada2_dada/dada2_dada/1.12+galaxy1 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/dada2_dada/dada2_dada/1.12+galaxy0
dada2_dada
Requirements (dependencies defined in the <requirements> tag set)
name version type
bioconductor-dada2 1.12 package
Functional tests
name inputs outputs required files
Test-1 batch_cond|derep: filterAndTrim_F3D0_R1.fq.gz
batch_cond|batch_select: no
err: learnErrors_F3D0_R1.Rdata
filterAndTrim_F3D0_R1.fq.gz
learnErrors_F3D0_R1.Rdata
Test-2 batch_cond|derep: filterAndTrim_F3D0_R1.fq.gz
batch_cond|batch_select: yes
err: learnErrors_F3D0_R1.Rdata
attributes: name
filterAndTrim_F3D0_R1.fq.gz
learnErrors_F3D0_R1.Rdata
name
Test-3 batch_cond|derep: filterAndTrim_F3D0_R1.fq.gz
batch_cond|pool: pseudo
batch_cond|batch_select: no
err: learnErrors_F3D0_R1.Rdata
filterAndTrim_F3D0_R1.fq.gz
learnErrors_F3D0_R1.Rdata