Repository revision
9:271c9d5f0d10

Repository 'xcms_plot_chromatogram'
hg clone https://toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_plot_chromatogram

xcms plot chromatogram tool metadata
Miscellaneous
Plots base peak intensity chromatogram (BPI) and total ion current chromatogram (TIC) from MSnbase or xcms experiment(s)
xcms_plot_chromatogram
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_plot_chromatogram/xcms_plot_chromatogram/3.4.4.0
3.4.4.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_plot_chromatogram/xcms_plot_chromatogram/3.6.1.0
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_plot_chromatogram/xcms_plot_chromatogram/3.4.4.0 (this tool)
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_plot_chromatogram/xcms_plot_chromatogram/3.4.3.0
toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_plot_chromatogram/xcms_plot_chromatogram/3.0.0.0
xcms_plot_chromatogram
Requirements (dependencies defined in the <requirements> tag set)
name version type
bioconductor-xcms 3.4.4 package
r-batch 1.1_4 package
r-rcolorbrewer 1.1_2 package
unzip 6.0 package
Functional tests
name inputs outputs required files
Test-1 images: faahKO-single.xset.merged.group.retcor.RData
sampleMetadata: sampleMetadata.tab
file_load_section|file_load_conditional|input: ['wt15.CDF', 'ko16.CDF', 'ko15.CDF', 'wt16.CDF']
file_load_section|file_load_conditional|file_load_select: yes
attributes: name
attributes: name
faahKO-single.xset.merged.group.retcor.RData
sampleMetadata.tab
wt15.CDF
ko16.CDF
ko15.CDF
wt16.CDF
name