| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/extract_genomic_dna/Extract genomic DNA 1/3.0.3+galaxy2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/extract_genomic_dna/Extract genomic DNA 1/3.0.3 |
| toolshed.g2.bx.psu.edu/repos/iuc/extract_genomic_dna/Extract genomic DNA 1/3.0.2 |
| toolshed.g2.bx.psu.edu/repos/iuc/extract_genomic_dna/Extract genomic DNA 1/3.0.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/extract_genomic_dna/Extract genomic DNA 1/3.0.0 |
| Extract genomic DNA 1 |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bx-python | 0.7.1 | package |
| six | 1.13.0 | package |
| ucsc-fatotwobit | 377 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
interpret_features: no reference_genome_cond|reference_genome: mm9.fasta output_format_cond|output_format: fasta reference_genome_cond|reference_genome_source: history output_format_cond|fasta_header_type_cond|fasta_header_delimiter: tilde input: mm9_input1.gff output_format_cond|fasta_header_type_cond|fasta_header_type: char_delimited |
attributes: name |
mm9_input1.gff mm9.fasta name |
| Test-2 |
interpret_features: yes reference_genome_cond|reference_genome: mm9.fasta output_format_cond|output_format: fasta reference_genome_cond|reference_genome_source: history input: mm9_input1.gff output_format_cond|fasta_header_type_cond|fasta_header_type: bedtools_getfasta_default |
attributes: name |
mm9_input1.gff mm9.fasta name |
| Test-3 |
input: mm9_input1.gff interpret_features: no output_format_cond|output_format: interval reference_genome_cond|reference_genome_source: history reference_genome_cond|reference_genome: mm9.fasta |
attributes: name |
mm9_input1.gff mm9.fasta name |
| Test-4 |
input: mm9_input1.gff interpret_features: yes output_format_cond|output_format: interval reference_genome_cond|reference_genome_source: history reference_genome_cond|reference_genome: mm9.fasta |
attributes: name |
mm9_input1.gff mm9.fasta name |