Galaxy |

Circos: Alignments to links tool metadata

Miscellaneous

Name: Circos: Alignments to links

Description: reformats alignment files to prepare for Circos

Id: circos_aln_to_links

Guid: toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_aln_to_links/0.69.8+galaxy10

Version: 0.69.8+galaxy10

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_aln_to_links/0.69.8+galaxy12

toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_aln_to_links/0.69.8+galaxy10 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_aln_to_links/0.69.8+galaxy9

toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_aln_to_links/0.69.8+galaxy8

toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_aln_to_links/0.69.8+galaxy7

toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_aln_to_links/0.69.8+galaxy6

toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_aln_to_links/0.69.8+galaxy5

toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_aln_to_links/0.69.8+galaxy4

toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_aln_to_links/0.69.8+galaxy3

toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_aln_to_links/0.69.8+galaxy2

toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_aln_to_links/0.69.8+galaxy1

circos_aln_to_links

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

circos

0.69.8

package

python

2.7

package

bcbiogff

0.6.4

package

biopython

1.70

package

pybigwig

0.3.13

package

circos-tools

0.23

package

grep

3.4

package

gawk

5.1.0

package

tar

1.29

package

Additional information about this tool

Command:

python '$__tool_directory__/alignments-to-links.py' '$input' '$input.ext' > '$output'

Interpreter: None

Forces a history refresh: False

Functional tests

name

inputs

outputs

required files

Test-1

input: alignments/1.maf

name: value

alignments/1.maf
value