| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_bundlelinks/0.69.8+galaxy10 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_bundlelinks/0.69.8+galaxy1 |
| circos_bundlelinks |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| circos | 0.69.8 | package |
| python | 2.7 | package |
| bcbiogff | 0.6.4 | package |
| biopython | 1.70 | package |
| pybigwig | 0.3.13 | package |
| circos-tools | 0.23 | package |
| grep | 3.4 | package |
| gawk | 5.1.0 | package |
| tar | 1.29 | package |
| Additional information about this tool |
bundlelinks
#if $max_gap:
-max_gap $max_gap
#end if
-min_bundle_membership $min_bundle_membership
#if $min_bundle_extent
-min_bundle_extent $min_bundle_extent
#end if
#if $min_bundle_size
-min_bundle_size $min_bundle_size
#end if
#if $min_bundle_identity
-min_bundle_identity $min_bundle_identity
#end if
< '$linksfile' | sed 's/ /\t/g' > '$outfile'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
linksfile: bundlelinks/1.tab max_gap: 1000000 min_bundle_membership: 0 |
name: value |
bundlelinks/1.tab value |