| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_gc_skew/0.69.8+galaxy10 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_gc_skew/0.69.8+galaxy1 |
| circos_gc_skew |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| circos | 0.69.8 | package |
| python | 2.7 | package |
| bcbiogff | 0.6.4 | package |
| biopython | 1.70 | package |
| pybigwig | 0.3.13 | package |
| circos-tools | 0.23 | package |
| grep | 3.4 | package |
| gawk | 5.1.0 | package |
| tar | 1.29 | package |
| Additional information about this tool |
ln -s -f
#if $reference_genome.reference_genome_source == "history"
'$reference_genome.history_item'
#else
'$reference_genome.builtin.fields.path'
#end if
reference.fa &&
python '$__tool_directory__/gc_skew.py' reference.fa '$window' '$output'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
reference_genome|history_item: gc_skew/1.fa reference_genome|reference_genome_source: history window: 2 |
name: value |
gc_skew/1.fa value |