Repository revision
12:290a11559985

Repository 'circos'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/circos

Circos: Interval to Circos Text Labels tool metadata
Miscellaneous
reformats interval files to prepare for Circos text labels
circos_interval_to_text
toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_interval_to_text/0.69.8+galaxy10
0.69.8+galaxy10
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_interval_to_text/0.69.8+galaxy12
toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_interval_to_text/0.69.8+galaxy10 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_interval_to_text/0.69.8+galaxy9
toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_interval_to_text/0.69.8+galaxy8
toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_interval_to_text/0.69.8+galaxy7
toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_interval_to_text/0.69.8+galaxy6
toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_interval_to_text/0.69.8+galaxy5
toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_interval_to_text/0.69.8+galaxy4
toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_interval_to_text/0.69.8+galaxy3
toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_interval_to_text/0.69.8+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_interval_to_text/0.69.8+galaxy1
circos_interval_to_text
Requirements (dependencies defined in the <requirements> tag set)
name version type
circos 0.69.8 package
python 2.7 package
bcbiogff 0.6.4 package
biopython 1.70 package
pybigwig 0.3.13 package
circos-tools 0.23 package
grep 3.4 package
gawk 5.1.0 package
tar 1.29 package
Additional information about this tool
python
#if $ref.ref_source == 'gff3':
    '$__tool_directory__/text-from-gff3.py' '$input' '${ref.attr}'
#else
    '$__tool_directory__/text-from-bed.py' '$input'
#end if
> '$output'
    
None
False
Functional tests
name inputs outputs required files
Test-1 ref|input: text/1.bed
ref|ref_source: bed
name: value
text/1.bed
value
Test-2 ref|input: text/2.gff3
ref|attr: Name
ref|ref_source: gff3
name: value
text/2.gff3
value