| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_interval_to_text/0.69.8+galaxy10 |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_interval_to_text/0.69.8+galaxy9 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_interval_to_text/0.69.8+galaxy8 |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_interval_to_text/0.69.8+galaxy7 |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_interval_to_text/0.69.8+galaxy6 |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_interval_to_text/0.69.8+galaxy5 |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_interval_to_text/0.69.8+galaxy4 |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_interval_to_text/0.69.8+galaxy3 |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_interval_to_text/0.69.8+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_interval_to_text/0.69.8+galaxy1 |
| circos_interval_to_text |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| circos | 0.69.8 | package |
| python | 2.7 | package |
| bcbiogff | 0.6.4 | package |
| biopython | 1.70 | package |
| pybigwig | 0.3.13 | package |
| circos-tools | 0.23 | package |
| grep | 3.4 | package |
| gawk | 5.1.0 | package |
| tar | 1.29 | package |
| Additional information about this tool |
python
#if $ref.ref_source == 'gff3':
'$__tool_directory__/text-from-gff3.py' '$input' '${ref.attr}'
#else
'$__tool_directory__/text-from-bed.py' '$input'
#end if
> '$output'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
ref|input: text/1.bed ref|ref_source: bed |
name: value |
text/1.bed value |
| Test-2 |
ref|input: text/2.gff3 ref|attr: Name ref|ref_source: gff3 |
name: value |
text/2.gff3 value |