| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circos/0.69.8+galaxy5 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circos/0.69.8+galaxy1 |
| circos |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| circos | 0.69.8 | package |
| python | 2.7 | package |
| bcbiogff | 0.6.4 | package |
| biopython | 1.70 | package |
| pybigwig | 0.3.13 | package |
| circos-tools | 0.23 | package |
| grep | 3.4 | package |
| gawk | 5.1.0 | package |
| tar | 1.29 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
reference_genome|ref|ref_source: history outputs|svg: True outputs|png: True reference_genome|ref|genome_fasta: 1/input.fa |
attributes: name attributes: name |
1/input.fa name |
| Test-2 |
sec_tdd|data_0|plot_format|data_source: 1/sine.tab ticks|tick_group_1|ticks|show_tick_labels: yes sec_tdd|data_2|r0: 0.6 sec_tdd|data_0|r0: 0.8 ticks|tick_group_1|spacing: 5 ticks|tick_group_0|spacing: 1 reference_genome|ref|genome_fasta: 1/input.fa sec_tdd|data_0|r1: 0.9 sec_links|data_0|radius: 0.59 sec_links|data_0|linktype|ribbon: yes sec_tdd|data_2|plot_format|plot_format_select: tile sec_tdd|data_1|r1: 0.8 sec_tdd|data_1|r0: 0.7 sec_links|data_0|data_source: 1/links.txt outputs|svg: True sec_tdd|data_2|plot_format|data_source: 1/tiles.bed sec_tdd|data_1|plot_format|plot_format_select: scatter sec_tdd|data_1|plot_format|data_source: 1/sine.tab reference_genome|ref|ref_source: history ideogram|units: kb ticks|tick_group_1|ticks|format: %.1f sec_tdd|data_0|plot_format|plot_format_select: histogram sec_tdd|data_2|r1: 0.7 |
attributes: name attributes: name |
1/input.fa 1/sine.tab 1/tiles.bed 1/links.txt name |