| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circgraph/0.9-RC2 (this tool) |
| circgraph |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| circos | 0.69.5 | package |
| python | 2.7 | package |
| bcbiogff | 0.6.4 | package |
| biopython | 1.70 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
ticks|tick_group_0|label_size: 20.0 sec_tdd|data_0|plot_format|format_specific|extend_bins: False sec_tdd|data_0|plot_format|data_source: 1/0-0.wig sec_tdd|data_1|plot_format|format_specific|thickness: 15.0 sec_tdd|data_2|plot_format|format_specific|stroke_thickness: 0 sec_tdd|data_1|plot_format|format_specific|stroke_thickness: 1 sec_tdd|data_2|orientation: False sec_tdd|data_1|orientation: False ideogram|radius: 0.9 sec_tdd|data_2|r0: 0.6 sec_tdd|data_2|r1: 0.69 ticks|multiplier: 0.001 sec_links|data_1|radius: 0.45 sec_tdd|data_1|plot_format|format_specific|overflow|overflow_behavior: grow sec_tdd|data_1|plot_format|format_specific|overflow|layer_overflow_color: #ffc000 ticks|tick_group_0|show_tick_labels: True reference_genome|genome_fasta: 1/input.fa ticks|tick_group_0|label_offset: 10.0 sec_tdd|data_0|r0: 0.8 sec_tdd|data_0|r1: 0.89 sec_links|data_0|radius: 0.59 sec_tdd|data_2|plot_format|format_specific|glyph: triangle ideogram|ideogram_labels|parallel: False sec_tdd|data_0|plot_format|format_specific|fill_color: purples-13-seq ideogram|spacing: 0.005 sec_tdd|data_1|plot_format|format_specific|color: #000000 sec_tdd|data_1|r1: 0.79 ideogram|ideogram_labels|show_label: True sec_links|data_0|data_source: 1/links.txt sec_tdd|data_2|plot_format|format_specific|stroke_color: #000000 ideogram|thickness: 10.0 sec_links|data_0|linktype|ribbon: yes sec_tdd|data_1|plot_format|format_specific|padding: 8.0 sec_tdd|data_2|plot_format|format_specific|glyph_size: 8 sec_tdd|data_2|plot_format|format_specific|data_max: 1.0 sec_tdd|data_2|plot_format|data_source: 1/2.wig ticks|tick_group_1|size: 10.0 sec_links|data_1|color: #42aa42 sec_tdd|data_1|plot_format|format_specific|layers: 15 sec_links|data_1|bezier_radius: 0 sec_links|data_0|sec_link_rule|rules_0|conditions_0|application|application_select: pos1 sec_tdd|data_1|plot_format|plot_format_select: tile sec_tdd|data_1|plot_format|data_source: 1/1.gff3 sec_tdd|data_1|plot_format|format_specific|fill_color: rdylgn-15-div sec_tdd|data_2|plot_format|plot_format_select: scatter sec_links|data_0|color: #9966ff ticks|tick_group_1|label_size: 20.0 sec_links|data_0|sec_link_rule|rules_0|conditions_0|application|comparison|compare: lt ticks|tick_group_0|size: 20.0 reference_genome|reference_genome_source: history ticks|show_ticks: True sec_links|data_0|bezier_radius: 0.3 ticks|color: #17365d ticks|radius: 1.0 sec_links|data_0|sec_link_rule|rules_0|conditions_0|application|comparison|compval: 25000 sec_tdd|data_1|r0: 0.7 sec_tdd|data_2|plot_format|format_specific|data_min: 0.0 sec_tdd|data_0|orientation: False sec_links|data_1|linktype|ribbon: yes sec_links|data_0|sec_link_rule|rules_0|actions_0|action|action_select: color sec_tdd|data_2|plot_format|format_specific|color: #555555 ticks|tick_group_1|label_offset: 10.0 ticks|tick_group_1|show_tick_labels: False sec_links|data_1|data_source: 1/links2.txt sec_tdd|data_0|plot_format|plot_format_select: histogram |
attributes: name attributes: name |
1/input.fa 1/0-0.wig 1/1.gff3 1/2.wig 1/links.txt 1/links2.txt name |