| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_binlinks/0.69.8+galaxy12 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_binlinks/0.69.8+galaxy10 |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_binlinks/0.69.8+galaxy9 |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_binlinks/0.69.8+galaxy8 |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_binlinks/0.69.8+galaxy7 |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_binlinks/0.69.8+galaxy6 |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_binlinks/0.69.8+galaxy1 |
| circos_binlinks |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| circos | 0.69.8 | package |
| bcbiogff | 0.6.6 | package |
| biopython | 1.79 | package |
| pybigwig | 0.3.18 | package |
| circos-tools | 0.23 | package |
| grep | 3.10 | package |
| tar | 1.34 | package |
| Additional information about this tool |
binlinks
-bin_size $bin_size
#if str($link_end) != '':
-link_end '$link_end'
#end if
#if str($output_style) != '':
-output_style $output_style
#end if
$num
$log
$normalize
< '$linksfile' | sed 's/ /\t/g' > '$outfile'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
bin_size: 1000000 linksfile: binlinks/1.tab |
name: value |
binlinks/1.tab value |