| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_tableviewer/0.69.8+galaxy12 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_tableviewer/0.69.8+galaxy1 |
| circos_tableviewer |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| circos | 0.69.8 | package |
| bcbiogff | 0.6.6 | package |
| biopython | 1.79 | package |
| pybigwig | 0.3.18 | package |
| circos-tools | 0.23 | package |
| grep | 3.10 | package |
| tar | 1.34 | package |
| Additional information about this tool |
mkdir -p circos/data/ &&
mkdir -p circos/etc/ &&
cp '$circos_conf' circos/etc/circos.conf &&
parse-table -file '$table' -conf '$parse_table_conf' > tmp &&
make-conf -dir circos/data < tmp &&
tar -czf circos.tar.gz circos &&
cd circos &&
circos -conf etc/circos.conf &&
mv circos.png ../ &&
mv circos.svg ../
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
table: tableviewer/1.tab |
name: value |
tableviewer/1.tab value |
| Test-2 |
table: tableviewer/1.tab limits|max_ticks: 1 limits|max_ideograms: 1 limits|max_links: 1 limits|max_points_per_track: 1 |
tableviewer/1.tab |