Repository revision
9:df7356989ac1

Repository 'circos'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/circos

Circos tool metadata
Miscellaneous
Circos
visualizes data in a circular layout
circos
toolshed.g2.bx.psu.edu/repos/iuc/circos/circos/0.69.8+galaxy7
0.69.8+galaxy7
circos --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/circos/circos/0.69.8+galaxy8
toolshed.g2.bx.psu.edu/repos/iuc/circos/circos/0.69.8+galaxy7 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/circos/circos/0.69.8+galaxy6
toolshed.g2.bx.psu.edu/repos/iuc/circos/circos/0.69.8+galaxy1
circos
Requirements (dependencies defined in the <requirements> tag set)
name version type
circos 0.69.8 package
python 2.7 package
bcbiogff 0.6.4 package
biopython 1.70 package
pybigwig 0.3.13 package
circos-tools 0.23 package
grep 3.4 package
gawk 5.1.0 package
tar 1.29 package
Functional tests
name inputs outputs required files
Test-1 reference_genome|ref|genome_fasta: 1/input.fa
reference_genome|ref|ref_source: history
outputs|png: True
outputs|svg: True
name: value
name: value
1/input.fa
value
Test-2 reference_genome|ref|genome_fasta: 1/input.fa
reference_genome|ref|ref_source: history
ideogram|units: kb
sec_tdd|data_0|r1: 0.9
sec_tdd|data_0|r0: 0.8
sec_tdd|data_0|plot_format|data_source: 1/sine.tab
sec_tdd|data_0|plot_format|plot_format_select: histogram
sec_tdd|data_1|r1: 0.8
sec_tdd|data_1|r0: 0.7
sec_tdd|data_1|plot_format|data_source: 1/sine.tab
sec_tdd|data_1|plot_format|plot_format_select: scatter
sec_tdd|data_2|r1: 0.7
sec_tdd|data_2|r0: 0.6
sec_tdd|data_2|plot_format|data_source: 1/tiles.bed
sec_tdd|data_2|plot_format|plot_format_select: tile
sec_links|data_0|radius: 0.59
sec_links|data_0|data_source: 1/links.txt
sec_links|data_0|linktype|ribbon: yes
ticks|tick_group_0|spacing: 1
ticks|tick_group_1|spacing: 5
ticks|tick_group_1|ticks|format: %.1f
ticks|tick_group_1|ticks|show_tick_labels: yes
outputs|svg: True
name: value
name: value
1/input.fa
1/sine.tab
1/tiles.bed
1/links.txt
value