Repository revision
9:df7356989ac1

Repository 'circos'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/circos

Circos: Link Density Track tool metadata
Miscellaneous
reduce links to a density plot
circos_binlinks
toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_binlinks/0.69.8+galaxy7
0.69.8+galaxy7
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_binlinks/0.69.8+galaxy8
toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_binlinks/0.69.8+galaxy7 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_binlinks/0.69.8+galaxy6
toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_binlinks/0.69.8+galaxy1
circos_binlinks
Requirements (dependencies defined in the <requirements> tag set)
name version type
circos 0.69.8 package
python 2.7 package
bcbiogff 0.6.4 package
biopython 1.70 package
pybigwig 0.3.13 package
circos-tools 0.23 package
grep 3.4 package
gawk 5.1.0 package
tar 1.29 package
Additional information about this tool
binlinks
    -bin_size $bin_size
    #if str($link_end) != '':
        -link_end '$link_end'
    #end if

    #if str($output_style) != '':
        -output_style $output_style
    #end if

    $num
    $log
    $normalize

    < '$linksfile' | sed 's/ /\t/g' > '$outfile'

    
None
False
Functional tests
name inputs outputs required files
Test-1 bin_size: 1000000
linksfile: binlinks/1.tab
name: value
binlinks/1.tab
value