Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/circos/circos/0.69.8+galaxy2 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/circos/circos/0.69.8+galaxy1 |
circos |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
circos | 0.69.8 | package |
python | 2.7 | package |
bcbiogff | 0.6.4 | package |
biopython | 1.70 | package |
pybigwig | 0.3.13 | package |
circos-tools | 0.23 | package |
tar | 1.29 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
reference_genome|ref|ref_source: history outputs|svg: True outputs|png: True reference_genome|ref|genome_fasta: 1/input.fa |
attributes: name attributes: name |
1/input.fa name |
Test-2 |
sec_tdd|data_0|plot_format|data_source: 1/sine.tab ticks|tick_group_1|ticks|show_tick_labels: yes sec_tdd|data_2|r0: 0.6 sec_tdd|data_0|r0: 0.8 ticks|tick_group_1|spacing: 20000 ticks|tick_group_0|spacing: 5000 reference_genome|ref|genome_fasta: 1/input.fa sec_tdd|data_0|r1: 0.9 sec_links|data_0|radius: 0.59 sec_links|data_0|linktype|ribbon: yes sec_tdd|data_2|plot_format|plot_format_select: tile sec_tdd|data_1|r1: 0.8 sec_tdd|data_1|r0: 0.7 sec_links|data_0|data_source: 1/links.txt outputs|svg: True sec_tdd|data_2|plot_format|data_source: 1/tiles.bed sec_tdd|data_1|plot_format|plot_format_select: scatter sec_tdd|data_1|plot_format|data_source: 1/sine.tab ticks|show_ticks: True reference_genome|ref|ref_source: history ticks|tick_group_1|ticks|format: %.1f sec_tdd|data_0|plot_format|plot_format_select: histogram sec_tdd|data_2|r1: 0.7 |
attributes: name attributes: name |
1/input.fa 1/sine.tab 1/tiles.bed 1/links.txt name |