| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/msgfplus/msgfplus/0.2 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/msgfplus/msgfplus/0.1 (this tool) |
| msgfplus |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| msgf_plus | 2016.10.26 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
tda: True ntt: 1 common_fixed_modifications: t: 50 common_variable_modifications: precursor_ion_tol_units: ppm |
output: 201208-378803-msgf_20161026-50ppm-semitryptic-no_mods.mzid |
201208-378803-msgf_20161026-50ppm-semitryptic-no_mods.mzid |
| Test-2 |
tda: True ntt: 1 common_fixed_modifications: t: 50 common_variable_modifications: precursor_ion_tol_units: ppm |
output: 201208-378803-msgf-50ppm-semitryptic-no_mods.mzid |
201208-378803-msgf-50ppm-semitryptic-no_mods.mzid |
| Test-3 |
advanced|maxLength: 20 custom_mods_0|position_specificity: c-term tda: True advanced|isotope_high: 0 common_fixed_modifications: ['C2H3N1O1_C_fix_any_Carbamidomethyl', '144.102063_*_fix_N-term_iTRAQ4plex', '144.102063_K_fix_any_iTRAQ4plex'] custom_mods_1|mod_name: cGMP custom_mods_1|position_specificity: any inst: 2 custom_mods_1|formula_or_mass: C10H10N5O7P custom_mods_1|aa_specificity: ['C', 'S'] advanced|m: 3 advanced|n: 2 advanced|protocol: 2 advanced|isotope_low: -1 custom_mods_0|formula_or_mass: C-2H-2O-2 custom_mods_0|fix_or_opt: opt e: 3 precursor_ion_tol_units: Da custom_mods_1|fix_or_opt: opt advanced|maxCharge: 6 advanced|minLength: 10 advanced|addFeatures: True advanced|minCharge: 2 t: 0.02 common_variable_modifications: ['O1_M_opt_any_Oxidation', 'H-3N-1_Q_opt_N-term_Gln->pyro-Glu'] custom_mods_0|mod_name: Gly-loss+Amide custom_mods_0|aa_specificity: G |
output: 201208-378803-msgf_20161026-2mmu-tryptic-many_mods.mzid |
201208-378803-msgf_20161026-2mmu-tryptic-many_mods.mzid |