Galaxy |

ProteomIQon PSMStatistics tool metadata

Miscellaneous

Name: ProteomIQon PSMStatistics

Description: utilizes semi supervised machine learning techniques to integrate search engine scores as well as the mentioned quality scores into one single consensus score.

Id: proteomiqon_psmstatistics

Guid: toolshed.g2.bx.psu.edu/repos/galaxyp/proteomiqon_psmstatistics/proteomiqon_psmstatistics/0.0.8

Version: 0.0.8

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/galaxyp/proteomiqon_psmstatistics/proteomiqon_psmstatistics/0.0.8 (this tool)

toolshed.g2.bx.psu.edu/repos/galaxyp/proteomiqon_psmstatistics/proteomiqon_psmstatistics/0.0.7

toolshed.g2.bx.psu.edu/repos/galaxyp/proteomiqon_psmstatistics/proteomiqon_psmstatistics/0.0.6

proteomiqon_psmstatistics

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

proteomiqon-psmstatistics

0.0.8

package

Functional tests

name

inputs

outputs

required files

Test-1

psm: sample.psm
peptideDB: sample.db
ThresholdCond|QValueThreshold: 0.01
ThresholdCond|PepValueThreshold: 0.05
ThresholdCond|MaxIterations: 15
ThresholdCond|MinimumIncreaseBetweenIterations: 0.005
ThresholdCond|ProcessingType: Estimate
ParseProteinIDRegexPattern: id
outputParamfile: False

sample.psm
sample.db

Test-2

name: value

sample.psm
sample.db
value

Test-3

name: value

sample.psm
sample.db
value

Test-4

psm: sample.psm
peptideDB: sample.db
ThresholdCond|SequestLike: 5.0
ThresholdCond|Andromeda: 40.0
ThresholdCond|ProcessingType: Fixed
ParseProteinIDRegexPattern: id
outputParamfile: True

name: value

sample.psm
sample.db
value