Repository revision
2:f1532cb33c75

Repository 'spades_metaviralspades'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/spades_metaviralspades

metaviralSPAdes tool metadata
Miscellaneous
extract and assembly viral genomes from metagenomic data
spades_metaviralspades
toolshed.g2.bx.psu.edu/repos/iuc/spades_metaviralspades/spades_metaviralspades/3.15.3+galaxy1
3.15.3+galaxy1
spades.py --version 2>&1 | awk -F 'v' '{print $2}'
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/spades_metaviralspades/spades_metaviralspades/3.15.3+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/spades_metaviralspades/spades_metaviralspades/3.15.3+galaxy1 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/spades_metaviralspades/spades_metaviralspades/3.15.3+galaxy0
spades_metaviralspades
Requirements (dependencies defined in the <requirements> tag set)
name version type
spades 3.15.3 package
zip 3.0 package
Functional tests
name inputs outputs required files
Test-1 singlePaired|input1: pl1.fq.gz
singlePaired|input2: pl2.fq.gz
singlePaired|sPaired: paired
name: value
name: value
pl1.fq.gz
pl2.fq.gz
value
Test-2 singlePaired|input1: pl1.fq.gz
singlePaired|input2: pl2.fq.gz
singlePaired|sPaired: paired
kmer_cond|manual: 33
kmer_cond|kmer_sel: manual
phred_offset: 33
optional_output: ['cn', 'cs', 'cr', 'sc', 'ss', 'l']
name: value
name: value
name: value
name: value
name: value
pl1.fq.gz
pl2.fq.gz
value
Test-3 singlePaired|input1: pl1.fq.gz
singlePaired|input2: pl2.fq.gz
singlePaired|sPaired: paired
optional_output: l
name: value
pl1.fq.gz
pl2.fq.gz
value
Test-4 singlePaired|input1: pl1.fq.gz
singlePaired|input2: pl2.fq.gz
singlePaired|sPaired: paired
optional_output: ['cr', 'l']
name: value
pl1.fq.gz
pl2.fq.gz
value