Repository revision
0:d87433f2a54d

Repository 'yahs'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/yahs

YAHS tool metadata
Miscellaneous
YAHS
yet another HI-C scaffolding tool
yahs
toolshed.g2.bx.psu.edu/repos/iuc/yahs/yahs/1.1a.2+galaxy0
1.1a.2+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/yahs/yahs/1.2a+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/yahs/yahs/1.1a.2+galaxy0 (this tool)
yahs
Requirements (dependencies defined in the <requirements> tag set)
name version type
yahs 1.1a.2 package
samtools 1.11 package
python 3.9 package
Functional tests
name inputs outputs required files
Test-1 function|fasta: test.fasta
function|bfile: test.bed
function|agp: test.agp
function|res: 50000,100000,150000,2000000,1000000
function|function_select: yahs
name: value
name: value
test.fasta
test.bed
test.agp
value
Test-2 function|fasta: test.fasta
function|bfile: test.bed
function|no_contig_ec: True
function|no_scaffold_ec: True
function|function_select: yahs
name: value
name: value
test.fasta
test.bed
value
Test-3 function|fasta: test.fasta
function|bfile: test.bam
function|enzyme_conditional|manual_enzyme: GATC,GANT
function|enzyme_conditional|enzyme_options: specific
function|length: 20
function|function_select: yahs
name: value
name: value
test.fasta
test.bam
value
Test-4 function|fasta: test.fasta
function|bfile: test.bam
function|enzyme_conditional|preconfigured_enzymes: arima1
function|enzyme_conditional|enzyme_options: preconfigured
function|length: 20
function|function_select: yahs
name: value
name: value
test.fasta
test.bam
value
Test-5 function|agp: test.agp
function|fasta: test.fasta
function|length: 20
function|function_select: agp_to_fasta
name: value
test.agp
test.fasta
value