Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/yahs/yahs/1.2a+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/yahs/yahs/1.1a.2+galaxy0 (this tool) |
yahs |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
yahs | 1.1a.2 | package |
samtools | 1.11 | package |
python | 3.9 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
function|fasta: test.fasta function|bfile: test.bed function|agp: test.agp function|res: 50000,100000,150000,2000000,1000000 function|function_select: yahs |
name: value name: value |
test.fasta test.bed test.agp value |
Test-2 |
function|fasta: test.fasta function|bfile: test.bed function|no_contig_ec: True function|no_scaffold_ec: True function|function_select: yahs |
name: value name: value |
test.fasta test.bed value |
Test-3 |
function|fasta: test.fasta function|bfile: test.bam function|enzyme_conditional|manual_enzyme: GATC,GANT function|enzyme_conditional|enzyme_options: specific function|length: 20 function|function_select: yahs |
name: value name: value |
test.fasta test.bam value |
Test-4 |
function|fasta: test.fasta function|bfile: test.bam function|enzyme_conditional|preconfigured_enzymes: arima1 function|enzyme_conditional|enzyme_options: preconfigured function|length: 20 function|function_select: yahs |
name: value name: value |
test.fasta test.bam value |
Test-5 |
function|agp: test.agp function|fasta: test.fasta function|length: 20 function|function_select: agp_to_fasta |
name: value |
test.agp test.fasta value |