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Repository revision

Revision: 2:71afa65f444a

Repository 'samtools_idxstats'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/peterjc/samtools_idxstats

BAM mapping statistics tool metadata

Miscellaneous

Name: BAM mapping statistics

Description: samtools idxstats

Id: samtools_idxstats

Guid: toolshed.g2.bx.psu.edu/repos/peterjc/samtools_idxstats/samtools_idxstats/0.0.5

Version: 0.0.5

Version command string: python $__tool_directory__/samtools_idxstats.py --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/peterjc/samtools_idxstats/samtools_idxstats/0.0.5 (this tool)

toolshed.g2.bx.psu.edu/repos/peterjc/samtools_idxstats/samtools_idxstats/0.0.4

toolshed.g2.bx.psu.edu/repos/peterjc/samtools_idxstats/samtools_idxstats/0.0.1

samtools_idxstats

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

samtools

0.1.19

package

Functional tests

name

inputs

outputs

required files

Test-1

input_bam: ex1.bam

out_tabular: ex1.idxstats.tabular

ex1.bam
ex1.idxstats.tabular