Repository revision

Revision: 71:d96f6c9a39e0

Repository 's_mart'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart

compare overlapping tool metadata

Miscellaneous

Name: compare overlapping

Description: Provide the queries that overlap with a reference.

Id: CompareOverlappingAdapt

Guid: toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/CompareOverlappingAdapt/1.0.0

Version: 1.0.0

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/CompareOverlappingAdapt/1.0.0 (this tool)

CompareOverlappingAdapt

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

PYTHONPATH

not provided

set_environment

Additional information about this tool

Command:

../Java/Python/CompareOverlappingAdapt.py -i $formatType.inputFileName1 -f $formatType.FormatInputFileName1 -j $formatType2.inputFileName2 -g $formatType2.FormatInputFileName2 -o $outputFileGff $InvertMatch $NotOverlapping -m $NbOverlap
		#if $OptionDistance.Dist == 'Yes':
			-d $OptionDistance.distance
		#end if
		#if $OptionCA == 'Collinear':
			-c 
		#elif $OptionCA == 'AntiSense':
			-a
		#end if

Interpreter: python

Forces a history refresh: False

Functional tests

No functional tests defined