Repository revision

Revision: 71:d96f6c9a39e0

Repository 's_mart'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart

get WIG profile tool metadata

Miscellaneous

Name: get WIG profile

Description: Compute the average profile of some genomic coordinates using WIG files (thus covering a large proportion of the genome).

Id: getWigProfile

Guid: toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/getWigProfile/1.0.0

Version: 1.0.0

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/getWigProfile/1.0.0 (this tool)

getWigProfile

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

PYTHONPATH

not provided

set_environment

Additional information about this tool

Command:

../Java/Python/getWigProfile.py -i $formatType.inputFileName
		#if $formatType.FormatInputFileName == 'bed':
			-f bed
		#elif $formatType.FormatInputFileName == 'gff':
			-f gff	
		#elif $formatType.FormatInputFileName == 'gff2':
			-f gff2
		#elif $formatType.FormatInputFileName == 'gff3':
			-f gff3
		#end if
		-w $inputWigFile
		-p $nbPoints
		-d $distance
		$strands
		-o $outputFilePNG
		#if $optionSMO.SMO == 'Yes':
			-m $optionSMO.smoothen
		#end if

Interpreter: python

Forces a history refresh: False

Functional tests

No functional tests defined