Repository revision
71:d96f6c9a39e0

Repository 's_mart'
hg clone https://toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart

compare overlapping small query tool metadata
Miscellaneous
Provide the queries that overlap with a reference, when the query data set is small.
CompareOverlappingSmallQuery
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/CompareOverlappingSmallQuery/1.0.0
1.0.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/CompareOverlappingSmallQuery/1.0.0 (this tool)
CompareOverlappingSmallQuery
Requirements (dependencies defined in the <requirements> tag set)
name version type
PYTHONPATH not provided set_environment
Additional information about this tool
../Java/Python/CompareOverlappingSmallQuery.py -i $formatType.inputFileName1 -f $formatType.FormatInputFileName1 -j $formatType2.inputFileName2 -g $formatType2.FormatInputFileName2 -o $outputFileGff $InvertMatch $NotOverlapping $OptionInclusionQuery $OptionInclusionRef -m $OptionMinOverlap
		#if $OptionDistance.Dist == 'Yes':
			-d $OptionDistance.distance
		#end if
		#if $OptionPcOverlapQuery.present == 'Yes':
			-p $OptionPcOverlapQuery.minOverlap
		#end if
		#if $OptionPcOverlapRef.present == 'Yes':
			-P $OptionPcOverlapRef.minOverlap
		#end if
		#if $OptionCA == 'Collinear':
			-c 
		#elif $OptionCA == 'AntiSense':
			-a
		#end if	
	
python
False
False
Functional tests
No functional tests defined