Repository revision
71:d96f6c9a39e0

Repository 's_mart'
hg clone https://toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart

get distance tool metadata
Miscellaneous
get distance
Give the distances between every data from the first input set with respect to the data from the second input set.
GetDistance
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/GetDistance/1.0.0
1.0.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/GetDistance/1.0.0 (this tool)
GetDistance
Requirements (dependencies defined in the <requirements> tag set)
name version type
PYTHONPATH not provided set_environment
Additional information about this tool
../Java/Python/getDistance.py -i $formatType.inputFileName1
		#if $formatType.FormatInputFileName1 == 'bed':
			-f bed
		#elif $formatType.FormatInputFileName1 == 'gff':
			-f gff	
		#elif $formatType.FormatInputFileName1 == 'gff2':
			-f gff2
		#elif $formatType.FormatInputFileName1 == 'gff3':
			-f gff3
		#elif $formatType.FormatInputFileName1 == 'sam':
			-f sam
		#elif $formatType.FormatInputFileName1 == 'gtf':
			-f gtf
		#end if
			
		-j $formatType2.inputFileName2
		#if $formatType2.FormatInputFileName2 == 'bed':
			-g bed
		#elif $formatType2.FormatInputFileName2 == 'gff':
			-g gff	
		#elif $formatType2.FormatInputFileName2 == 'gff2':
			-g gff2
		#elif $formatType2.FormatInputFileName2 == 'gff3':
			-g gff3
		#elif $formatType2.FormatInputFileName2 == 'sam':
			-g sam
		#elif $formatType2.FormatInputFileName2 == 'gtf':
			-g gtf
		#end if


		$absolute $proportion

		#if $OptionColinearOrAntiSens.OptionCA == "Colinear":
			-c 
		#elif $OptionColinearOrAntiSens.OptionCA == 'AntiSens':
			-a
		#end if

		#if $OptionMinDistance.MinD == "Yes":
			-m $OptionMinDistance.minDistance
		#end if

		#if $OptionMaxDistance.MaxD == "Yes":
			-M $OptionMaxDistance.maxDistance
		#end if

		$fivePrime $threePrime $spearMan

		#if $OptionBuckets.OBuckets == "Yes":
			-u $OptionBuckets.buckets
		#end if

		#if $OptionMinXaxis.MinX == "Yes":
			-x $OptionMinXaxis.minXaxis
		#end if

		#if $OptionMaxXaxis.MaxX == "Yes":
			-X $OptionMaxXaxis.maxXaxis
		#end if

		#if $OptionTitle.OTitle == "Yes":
			-t $OptionTitle.title
		#end if
		
		-o $outputFilePng
	
python
False
False
Functional tests
No functional tests defined