Repository revision
71:d96f6c9a39e0

Repository 's_mart'
hg clone https://toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart

clusterize tool metadata
Miscellaneous
clusterize
Clusterize features when their genomic intervals overlap.
MergingDataClusterize
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/MergingDataClusterize/1.0.0
1.0.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/MergingDataClusterize/1.0.0 (this tool)
MergingDataClusterize
Requirements (dependencies defined in the <requirements> tag set)
name version type
PYTHONPATH not provided set_environment
Additional information about this tool
#set $inputFiles = ",".join(["%s" % (s) for s in $formatType.inputFileName])
		../Java/Python/clusterize.py -i $inputFiles -f $formatType.FormatInputFileName -o $outputFileGff $colinear $normalize -d $distance
	
python
False
False
Functional tests
name inputs outputs required files
Test-1 normalize: False
colinear: False
formatType|inputFileName: smart_1.bed
distance: 0
formatType|FormatInputFileName: bed
output: smart_clusterize_out_1.gff3
smart_1.bed
smart_clusterize_out_1.gff3