Repository revision
71:d96f6c9a39e0

Repository 's_mart'
hg clone https://toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart

clusterize by sliding windows tool metadata
Miscellaneous
Produces a GFF3 file that clusters a list of transcripts using a sliding window. Cluster the data into regions (defined by size and overlap with next region).
clusterizeBySlidingWindows
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/clusterizeBySlidingWindows/1.0.0
1.0.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/clusterizeBySlidingWindows/1.0.0 (this tool)
clusterizeBySlidingWindows
Requirements (dependencies defined in the <requirements> tag set)
name version type
PYTHONPATH not provided set_environment
Additional information about this tool
#set $inputFiles = ",".join(["%s" % (s) for s in $formatType.inputFileName])
		../Java/Python/clusterizeBySlidingWindows.py -i $inputFiles -f $formatType.FormatInputFileName -s $size -e $overlap -o $outputFileGff $strands
		
		#if $OptionTag.tag == "Yes":
			-g $OptionTag.value
		#end if	

		#if $OptionsOperation.operation == "Yes":
			-r $OptionsOperation.value
		#end if
		
		#if $OptionWriteTag.writeTag == "Yes":
			#set $outputTags = ",".join(["%s" % (t["value"]) for t in $OptionWriteTag.writeTags])
			-w $outputTags
		#end if	
		
	
python
False
False
Functional tests
No functional tests defined