Repository revision
71:d96f6c9a39e0

Repository 's_mart'
hg clone https://toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart

get distribution tool metadata
Miscellaneous
Get Distribution: Get the distribution of the genomic coordinates along a genome.
getDistribution
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/getDistribution/1.0.0
1.0.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/getDistribution/1.0.0 (this tool)
getDistribution
Requirements (dependencies defined in the <requirements> tag set)
name version type
PYTHONPATH not provided set_environment
Additional information about this tool
../Java/Python/GetDistribution.py -i $formatType.inputFileName
		#if $formatType.FormatInputFileName == 'bed':
			-f bed
		#elif $formatType.FormatInputFileName == 'gff':
			-f gff
		#elif $formatType.FormatInputFileName == 'gff2':
			-f gff2
		#elif $formatType.FormatInputFileName == 'gff3':
			-f gff3
		#elif $formatType.FormatInputFileName == 'sam':
			-f sam
		#elif $formatType.FormatInputFileName == 'gtf':
			-f gtf
		#end if
		
		-r $refFile
		
		#if $optionNbBin.Nb == 'Yes':
			-b $optionNbBin.nbBins
		#end if
		
		#if $optionStart.start == 'Yes':
			-s $optionStart.startValue
		#end if	
		
		#if $optionEnd.end == 'Yes':
			-e $optionEnd.endValue
		#end if	
		
		#if $optionHeight.height == 'Yes':
			-H $optionHeight.heightValue
		#end if	
		
		#if $optionWidth.width == 'Yes':
			-W $optionWidth.widthValue
		#end if	
		
		#if $optionYMin.YMin == 'Yes':
			-y $optionYMin.YMinValue
		#end if
		
		#if $optionYMax.YMax == 'Yes':
			-Y $optionYMax.YMaxValue
		#end if
		
		#if $optionChrom.chrom == 'Yes':
			-c $optionChrom.chromValue
		#end if
	
		#if $optionColor.color == 'Yes':
			-l $optionColor.colorValue
		#end if

		$bothStrands
		$average
		$normalize
		-m
		-o $outputFile

	
python
False
False
Functional tests
No functional tests defined