Repository revision
71:d96f6c9a39e0

Repository 's_mart'
hg clone https://toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart

get letter distribution tool metadata
Miscellaneous
Calculate distribution for each nucleotide per position for all short reads
getLetterDistribution1
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/getLetterDistribution1/1.0.0
1.0.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/getLetterDistribution1/1.0.0 (this tool)
getLetterDistribution1
Requirements (dependencies defined in the <requirements> tag set)
name version type
PYTHONPATH not provided set_environment
Additional information about this tool
WrappGetLetterDistribution.py -i $inputFileName
	#if $formatType.FormatInputFileName == 'fasta':
		-f fasta
	#else :
		-f fastq
	#end if
	-c $ouputFileNameCSV -a $ouputFileNamePNG1 -b $ouputFileNamePNG2
    
python
False
False
Functional tests
name inputs outputs required files
Test-1 formatType|inputFileName: short_fastq.fastq
formatType|FormatInputFileName: fastq
outputFileNameCSV: exp_getletterdistribution_short_fastq.csv
short_fastq.fastq
exp_getletterdistribution_short_fastq.csv