Repository revision
71:d96f6c9a39e0

Repository 's_mart'
hg clone https://toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart

get WIG profile tool metadata
Miscellaneous
Compute the average profile of some genomic coordinates using WIG files (thus covering a large proportion of the genome).
getWigProfile
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/getWigProfile/1.0.0
1.0.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/getWigProfile/1.0.0 (this tool)
getWigProfile
Requirements (dependencies defined in the <requirements> tag set)
name version type
PYTHONPATH not provided set_environment
Additional information about this tool
../Java/Python/getWigProfile.py -i $formatType.inputFileName
		#if $formatType.FormatInputFileName == 'bed':
			-f bed
		#elif $formatType.FormatInputFileName == 'gff':
			-f gff	
		#elif $formatType.FormatInputFileName == 'gff2':
			-f gff2
		#elif $formatType.FormatInputFileName == 'gff3':
			-f gff3
		#end if
		-w $inputWigFile
		-p $nbPoints
		-d $distance
		$strands
		-o $outputFilePNG
		#if $optionSMO.SMO == 'Yes':
			-m $optionSMO.smoothen
		#end if		

	
python
False
False
Functional tests
No functional tests defined