Repository revision
71:d96f6c9a39e0

Repository 's_mart'
hg clone https://toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart

plot transcript list tool metadata
Miscellaneous
Plot some information from a list of transcripts.
plotTranscriptList
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/plotTranscriptList/1.0.0
1.0.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/yufei-luo/s_mart/plotTranscriptList/1.0.0 (this tool)
plotTranscriptList
Requirements (dependencies defined in the <requirements> tag set)
name version type
PYTHONPATH not provided set_environment
Additional information about this tool
../Java/Python/plotTranscriptList.py  -i $formatType.inputFileName
		#if $formatType.FormatInputFileName == 'gff':
			-f gff	
		#elif $formatType.FormatInputFileName == 'gff2':
			-f gff2
		#elif $formatType.FormatInputFileName == 'gff3':
			-f gff3
		#elif $formatType.FormatInputFileName == 'gtf':
			-f gtf
		#end if
		
		-x $xVal
		-y $yVal
		#if $optionz.z == 'Yes':
			-z $optionz.zVal
		#end if		
			
		-X $XVal
		-Y $YVal
		-Z $ZVal
			
		#if $optionxLab.xLab == 'Yes':
			-n $optionxLab.labVal
		#end if
		#if $optionyLab.yLab == 'Yes':
			-m $optionyLab.labVal
		#end if	

		$log
		-s $shape
		-b $bucket
		
		-o $outputFilePNG
	
python
False
False
Functional tests
No functional tests defined