Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images/cardinal_mz_images/2.4.0.0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images/cardinal_mz_images/1.12.1.2 (this tool) |
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images/cardinal_mz_images/1.12.1.1 |
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images/cardinal_mz_images/1.12.1.0 |
cardinal_mz_images |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
bioconductor-cardinal | 1.12.1 | package |
r-base | 3.5.1 | package |
r-gridextra | 2.3 | package |
r-lattice | 0.20_35 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
infile: image_contrast: histogram image_type: False name_column: 2 calibrant_file: inputpeptides.tabular colorkey: True strip: True filename: Testfile_imzml plusminus_dalton: 0.25 mz_column: 1 |
attributes: name |
inputpeptides.tabular name |
Test-2 |
infile: image_smoothing: gaussian name_column: 1 svg_pixelimage: True calibrant_file: inputpeptides2.tabular colorkey: True strip: False filename: Testfile_analyze75 plusminus_dalton: 0.5 mz_column: 1 |
attributes: name attributes: name |
inputpeptides2.tabular name |
Test-3 |
image_type: False name_column: 2 calibrant_file: inputpeptides.tabular colorkey: True strip: True filename: Testfile_rdata plusminus_dalton: 0.5 infile: preprocessed.RData mz_column: 1 |
attributes: name |
preprocessed.RData inputpeptides.tabular name |
Test-4 |
name_column: 1 filename: Testfile_rdata colorkey: False strip: True calibrant_file: inputpeptides2.tabular plusminus_dalton: 0.5 infile: empty_spectra.rdata mz_column: 1 |
attributes: name |
empty_spectra.rdata inputpeptides2.tabular name |