Repository revision
6:25b83cbd596a

Repository 'cardinal_mz_images'
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images

MSI mz images tool metadata
Miscellaneous
mass spectrometry imaging m/z heatmaps
cardinal_mz_images
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images/cardinal_mz_images/1.12.1.2
1.12.1.2
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images/cardinal_mz_images/2.4.0.0
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images/cardinal_mz_images/1.12.1.2 (this tool)
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images/cardinal_mz_images/1.12.1.1
toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images/cardinal_mz_images/1.12.1.0
cardinal_mz_images
Requirements (dependencies defined in the <requirements> tag set)
name version type
bioconductor-cardinal 1.12.1 package
r-base 3.5.1 package
r-gridextra 2.3 package
r-lattice 0.20_35 package
Functional tests
name inputs outputs required files
Test-1 infile:
image_contrast: histogram
image_type: False
name_column: 2
calibrant_file: inputpeptides.tabular
colorkey: True
strip: True
filename: Testfile_imzml
plusminus_dalton: 0.25
mz_column: 1
attributes: name

inputpeptides.tabular
name
Test-2 infile:
image_smoothing: gaussian
name_column: 1
svg_pixelimage: True
calibrant_file: inputpeptides2.tabular
colorkey: True
strip: False
filename: Testfile_analyze75
plusminus_dalton: 0.5
mz_column: 1
attributes: name
attributes: name

inputpeptides2.tabular
name
Test-3 image_type: False
name_column: 2
calibrant_file: inputpeptides.tabular
colorkey: True
strip: True
filename: Testfile_rdata
plusminus_dalton: 0.5
infile: preprocessed.RData
mz_column: 1
attributes: name
preprocessed.RData
inputpeptides.tabular
name
Test-4 name_column: 1
filename: Testfile_rdata
colorkey: False
strip: True
calibrant_file: inputpeptides2.tabular
plusminus_dalton: 0.5
infile: empty_spectra.rdata
mz_column: 1
attributes: name
empty_spectra.rdata
inputpeptides2.tabular
name