| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images/cardinal_mz_images/2.10.0.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images/cardinal_mz_images/2.6.0.2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images/cardinal_mz_images/2.6.0.1 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images/cardinal_mz_images/2.6.0.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images/cardinal_mz_images/2.4.0.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images/cardinal_mz_images/1.12.1.2 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images/cardinal_mz_images/1.12.1.1 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images/cardinal_mz_images/1.12.1.0 |
| cardinal_mz_images |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bioconductor-cardinal | 2.6.0 | package |
| r-gridextra | 2.3 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
infile: filename: Testfile_imzml calibrant_file: inputpeptides.tabular mz_column: 1 name_column: 2 plusminus_dalton: 0.25 image_contrast: histogram colorkey: True |
name: value |
inputpeptides.tabular value |
| Test-2 |
infile: filename: Testfile_analyze75 calibrant_file: inputpeptides2.tabular mz_column: 1 name_column: 1 plusminus_dalton: 0.5 image_smoothing: gaussian colorscale: magma colorkey: True svg_pixelimage: True |
name: value name: value |
inputpeptides2.tabular value |
| Test-3 |
infile: preprocessed.RData filename: Testfile_rdata calibrant_file: inputpeptides.tabular mz_column: 1 name_column: 2 plusminus_dalton: 0.5 colorkey: True |
name: value |
preprocessed.RData inputpeptides.tabular value |
| Test-4 |
infile: empty_spectra.rdata filename: Testfile_rdata calibrant_file: inputpeptides2.tabular mz_column: 1 name_column: 1 plusminus_dalton: 0.5 colorscale: plasma colorkey: False |
name: value |
empty_spectra.rdata inputpeptides2.tabular value |
| Test-5 |
infile: processed_cond|accuracy: 200 processed_cond|units: ppm processed_cond|processed_file: processed calibrant_file: inputpeptides.tabular mz_column: 1 name_column: 2 light_mode: black overlay_cond|colours_0|feature_color: #ff00ff overlay_cond|colours_1|feature_color: #1f497d overlay_cond|colours_2|feature_color: #00b050 overlay_cond|legend_position: topleft overlay_cond|overlay_selection: yes_overlay |
name: value |
inputpeptides.tabular value |