| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images/cardinal_mz_images/2.6.0.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images/cardinal_mz_images/2.4.0.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images/cardinal_mz_images/1.12.1.2 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images/cardinal_mz_images/1.12.1.1 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images/cardinal_mz_images/1.12.1.0 |
| cardinal_mz_images |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bioconductor-cardinal | 2.4.0 | package |
| r-base | 3.6.1 | package |
| r-gridextra | 2.3 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
image_contrast: histogram name_column: 2 calibrant_file: inputpeptides.tabular colorkey: True strip: True filename: Testfile_imzml plusminus_dalton: 0.25 infile: mz_column: 1 |
attributes: name |
inputpeptides.tabular name |
| Test-2 |
colorscale: magma name_column: 1 image_smoothing: gaussian svg_pixelimage: True calibrant_file: inputpeptides2.tabular colorkey: True strip: False filename: Testfile_analyze75 plusminus_dalton: 0.5 infile: mz_column: 1 |
attributes: name attributes: name |
inputpeptides2.tabular name |
| Test-3 |
name_column: 2 filename: Testfile_rdata colorkey: True strip: True calibrant_file: inputpeptides.tabular plusminus_dalton: 0.5 infile: preprocessed.RData mz_column: 1 |
attributes: name |
preprocessed.RData inputpeptides.tabular name |
| Test-4 |
colorscale: plasma name_column: 1 calibrant_file: inputpeptides2.tabular colorkey: False strip: True filename: Testfile_rdata plusminus_dalton: 0.5 infile: empty_spectra.rdata mz_column: 1 |
attributes: name |
empty_spectra.rdata inputpeptides2.tabular name |
| Test-5 |
processed_cond|units: ppm processed_cond|processed_file: processed name_column: 2 processed_cond|accuracy: 100 calibrant_file: inputpeptides.tabular overlay_cond|overlay_selection: yes_overlay overlay_cond|colours_1|feature_color: #1f497d overlay_cond|legend_position: topleft overlay_cond|colours_2|feature_color: #00b050 overlay_cond|colours_0|feature_color: #ff00ff infile: mz_column: 1 |
attributes: name |
inputpeptides.tabular name |