| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fidoadapter/FidoAdapter/2.8+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fidoadapter/FidoAdapter/2.6+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fidoadapter/FidoAdapter/2.5+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fidoadapter/FidoAdapter/2.3.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fidoadapter/FidoAdapter/2.2.0.1 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fidoadapter/FidoAdapter/2.2.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fidoadapter/FidoAdapter/2.1.0 |
| FidoAdapter |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| openms | 2.8 | package |
| openms-thirdparty | 2.8 | package |
| omssa | 2.1.9 | package |
| blast | 2.13.0 | package |
| ctdopts | 1.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
in: FidoAdapter_1_input.idXML separate_runs: False greedy_group_resolution: False no_cleanup: False all_PSMs: False group_level: False log2_states: 0 prob|protein: 0.0 prob|peptide: 0.0 prob|spurious: 0.0 adv_opts|keep_zero_group: False adv_opts|accuracy: None adv_opts|log2_states_precalc: 0 adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FidoAdapter_1_input.idXML value |
| Test-2 |
in: FidoAdapter_1_input.idXML separate_runs: True greedy_group_resolution: False no_cleanup: False all_PSMs: False group_level: False log2_states: 0 prob|protein: 0.0 prob|peptide: 0.0 prob|spurious: 0.0 adv_opts|keep_zero_group: False adv_opts|accuracy: None adv_opts|log2_states_precalc: 0 adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FidoAdapter_1_input.idXML value |
| Test-3 |
in: FidoAdapter_1_input.idXML separate_runs: False greedy_group_resolution: False no_cleanup: False all_PSMs: True group_level: True log2_states: 0 prob|protein: 0.0 prob|peptide: 0.0 prob|spurious: 0.0 adv_opts|keep_zero_group: False adv_opts|accuracy: None adv_opts|log2_states_precalc: 0 adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FidoAdapter_1_input.idXML value |
| Test-4 |
in: FidoAdapter_4_input.idXML separate_runs: False greedy_group_resolution: False no_cleanup: False all_PSMs: False group_level: False log2_states: 0 prob|protein: 0.0 prob|peptide: 0.0 prob|spurious: 0.0 adv_opts|keep_zero_group: False adv_opts|accuracy: None adv_opts|log2_states_precalc: 0 adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FidoAdapter_4_input.idXML value |
| Test-5 |
in: FidoAdapter_5_input.idXML separate_runs: False greedy_group_resolution: True no_cleanup: False all_PSMs: False group_level: False log2_states: 0 prob|protein: 0.0 prob|peptide: 0.0 prob|spurious: 0.0 adv_opts|keep_zero_group: False adv_opts|accuracy: None adv_opts|log2_states_precalc: 0 adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FidoAdapter_5_input.idXML value |
| Test-6 |
in: FidoAdapter_1_input.idXML separate_runs: False greedy_group_resolution: False no_cleanup: False all_PSMs: False group_level: False log2_states: 0 prob|protein: 0.9 prob|peptide: 0.01 prob|spurious: 0.0 adv_opts|keep_zero_group: False adv_opts|accuracy: None adv_opts|log2_states_precalc: 0 adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FidoAdapter_1_input.idXML value |