Repository revision
12:39a1dd32a40d

Repository 'openms_fidoadapter'
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fidoadapter

FidoAdapter tool metadata
Miscellaneous
FidoAdapter
Runs the protein inference engine Fido.
FidoAdapter
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fidoadapter/FidoAdapter/2.5+galaxy0
2.5+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fidoadapter/FidoAdapter/2.6+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fidoadapter/FidoAdapter/2.5+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fidoadapter/FidoAdapter/2.3.0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fidoadapter/FidoAdapter/2.2.0.1
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fidoadapter/FidoAdapter/2.2.0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fidoadapter/FidoAdapter/2.1.0
FidoAdapter
Requirements (dependencies defined in the <requirements> tag set)
name version type
openms 2.5 package
openms-thirdparty 2.5 package
blast 2.9.0 package
openjdk 8.0.192 package
ctdopts 1.4 package
Functional tests
name inputs outputs required files
Test-1 in: FidoAdapter_1_input.idXML
separate_runs: False
greedy_group_resolution: False
no_cleanup: False
all_PSMs: False
group_level: False
log2_states: 0
prob|protein: 0.0
prob|peptide: 0.0
prob|spurious: 0.0
adv_opts_cond|keep_zero_group: False
adv_opts_cond|accuracy:
adv_opts_cond|log2_states_precalc: 0
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FidoAdapter_1_input.idXML
value
Test-2 in: FidoAdapter_1_input.idXML
separate_runs: True
greedy_group_resolution: False
no_cleanup: False
all_PSMs: False
group_level: False
log2_states: 0
prob|protein: 0.0
prob|peptide: 0.0
prob|spurious: 0.0
adv_opts_cond|keep_zero_group: False
adv_opts_cond|accuracy:
adv_opts_cond|log2_states_precalc: 0
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FidoAdapter_1_input.idXML
value
Test-3 in: FidoAdapter_1_input.idXML
separate_runs: False
greedy_group_resolution: False
no_cleanup: False
all_PSMs: True
group_level: True
log2_states: 0
prob|protein: 0.0
prob|peptide: 0.0
prob|spurious: 0.0
adv_opts_cond|keep_zero_group: False
adv_opts_cond|accuracy:
adv_opts_cond|log2_states_precalc: 0
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FidoAdapter_1_input.idXML
value
Test-4 in: FidoAdapter_4_input.idXML
separate_runs: False
greedy_group_resolution: False
no_cleanup: False
all_PSMs: False
group_level: False
log2_states: 0
prob|protein: 0.0
prob|peptide: 0.0
prob|spurious: 0.0
adv_opts_cond|keep_zero_group: False
adv_opts_cond|accuracy:
adv_opts_cond|log2_states_precalc: 0
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FidoAdapter_4_input.idXML
value
Test-5 in: FidoAdapter_5_input.idXML
separate_runs: False
greedy_group_resolution: True
no_cleanup: False
all_PSMs: False
group_level: False
log2_states: 0
prob|protein: 0.0
prob|peptide: 0.0
prob|spurious: 0.0
adv_opts_cond|keep_zero_group: False
adv_opts_cond|accuracy:
adv_opts_cond|log2_states_precalc: 0
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FidoAdapter_5_input.idXML
value
Test-6 in: FidoAdapter_1_input.idXML
separate_runs: False
greedy_group_resolution: False
no_cleanup: False
all_PSMs: False
group_level: False
log2_states: 0
prob|protein: 0.9
prob|peptide: 0.01
prob|spurious: 0.0
adv_opts_cond|keep_zero_group: False
adv_opts_cond|accuracy:
adv_opts_cond|log2_states_precalc: 0
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FidoAdapter_1_input.idXML
value