Repository revision
20:9939786dd9c9

Repository 'hicexplorer_hicplotmatrix'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix

hicPlotMatrix tool metadata
Miscellaneous
plot a Hi-C contact matrix heatmap
hicexplorer_hicplotmatrix
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/3.6+galaxy1
3.6+galaxy1
hicPlotMatrix --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/3.7.2+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/3.6+galaxy1 (this tool)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/3.6+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/3.4.3.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/3.4.2.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/3.4.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/3.3.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/2.1.4.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/2.1.2.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/2.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/2.0.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/1.8.1.1
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/1.8.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/1.8.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/1.7.2.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/1.7.1.0
hicexplorer_hicplotmatrix
Requirements (dependencies defined in the <requirements> tag set)
name version type
hicexplorer 3.6 package
Functional tests
name inputs outputs required files
Test-1 matrix_h5_cooler: small_test_matrix.h5
clearMaskedBins: True
region: chr2L:3000000-3500000
region2: chr2L:3100000-3600000
log1p: True
pca_conditional|pca_type:
image_file_format: png
dpi: 10
name: value
small_test_matrix.h5
value
Test-2 matrix_h5_cooler: small_test_matrix.cool
region: chr2L:3000000-3500000
pca_conditional|pca_type:
image_file_format: pdf
dpi: 10
name: value
small_test_matrix.cool
value
Test-3 matrix_h5_cooler: small_test_matrix.cool
region: chr2L:3000000-3500000
colormap: hot
pca_conditional|pca_bigwig: hicPCA/pca1_test1.bw
pca_conditional|vMinBigwig: 10
pca_conditional|vMaxBigwig: 20
pca_conditional|flipBigwigSign: True
pca_conditional|scaleFactorBigwig: 2000
pca_conditional|pca_type: bigwig
image_file_format: svg
dpi: 10
name: value
small_test_matrix.cool
hicPCA/pca1_test1.bw
value