Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/3.7.2+galaxy0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/3.6+galaxy1 (this tool) |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/3.6+galaxy0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/3.4.3.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/3.4.2.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/3.4.1.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/3.3.1.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/2.1.4.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/2.1.2.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/2.1.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/2.0.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/1.8.1.1 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/1.8.1.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/1.8.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/1.7.2.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/1.7.1.0 |
hicexplorer_hicplotmatrix |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
hicexplorer | 3.6 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
matrix_h5_cooler: small_test_matrix.h5 clearMaskedBins: True region: chr2L:3000000-3500000 region2: chr2L:3100000-3600000 log1p: True pca_conditional|pca_type: image_file_format: png dpi: 10 |
name: value |
small_test_matrix.h5 value |
Test-2 |
matrix_h5_cooler: small_test_matrix.cool region: chr2L:3000000-3500000 pca_conditional|pca_type: image_file_format: pdf dpi: 10 |
name: value |
small_test_matrix.cool value |
Test-3 |
matrix_h5_cooler: small_test_matrix.cool region: chr2L:3000000-3500000 colormap: hot pca_conditional|pca_bigwig: hicPCA/pca1_test1.bw pca_conditional|vMinBigwig: 10 pca_conditional|vMaxBigwig: 20 pca_conditional|flipBigwigSign: True pca_conditional|scaleFactorBigwig: 2000 pca_conditional|pca_type: bigwig image_file_format: svg dpi: 10 |
name: value |
small_test_matrix.cool hicPCA/pca1_test1.bw value |