Repository revision
4:e972e07c7845

Repository 'cp_measure_image_quality'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/cp_measure_image_quality

MeasureImageQuality tool metadata
Miscellaneous
measure features that indicate image quality
cp_measure_image_quality
toolshed.g2.bx.psu.edu/repos/bgruening/cp_measure_image_quality/cp_measure_image_quality/3.1.9
3.1.9
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/cp_measure_image_quality/cp_measure_image_quality/3.1.9+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/cp_measure_image_quality/cp_measure_image_quality/3.1.9 (this tool)
cp_measure_image_quality
Requirements (dependencies defined in the <requirements> tag set)
name version type
python 3.7 package
Functional tests
name inputs outputs required files
Test-1 input_pipeline: common.cppipe
calc_for_images: All loaded images
include_rescaling_value: Yes
con_calc_blur_metrics|rpt_blur_measurements_0|blur_measurements: 20
con_calc_blur_metrics|calc_blur_metrics: Yes
calc_intensity_metrics: Yes
calc_saturation_metrics: Yes
con_calc_threshold|con_use_all_methods|rpt_threshold_method_0|con_threshold_methods|otsu_weighted_entropy: Weighted variance
con_calc_threshold|con_use_all_methods|rpt_threshold_method_0|con_threshold_methods|con_threshold_classes|threshold_classes: Two classes
con_calc_threshold|con_use_all_methods|rpt_threshold_method_0|con_threshold_methods|select_threshold_method: Otsu
con_calc_threshold|con_use_all_methods|use_all_methods: No
con_calc_threshold|calc_threshold: Yes
name: value
common.cppipe
value