Repository revision
12:9f995f5e855a

Repository 'scanpy_integrate_combat'
hg clone https://toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_integrate_combat

Scanpy ComBat tool metadata
Miscellaneous
adjust expression for variables that might introduce batch effect
scanpy_integrate_combat
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_integrate_combat/scanpy_integrate_combat/1.8.1+3+galaxy0
1.8.1+3+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_integrate_combat/scanpy_integrate_combat/1.8.1+galaxy9
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_integrate_combat/scanpy_integrate_combat/1.8.1+3+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_integrate_combat/scanpy_integrate_combat/1.8.1+2+galaxy0
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_integrate_combat/scanpy_integrate_combat/1.8.1+1+galaxy0
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_integrate_combat/scanpy_integrate_combat/1.8.1+galaxy0
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_integrate_combat/scanpy_integrate_combat/1.7.2+galaxy0
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_integrate_combat/scanpy_integrate_combat/1.6.0+galaxy1
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_integrate_combat/scanpy_integrate_combat/1.6.0+galaxy0
scanpy_integrate_combat
Requirements (dependencies defined in the <requirements> tag set)
name version type
scanpy-scripts 1.1.3 package
Functional tests
name inputs outputs required files
Test-1 input_obj_file: find_cluster.h5
input_format: anndata
output_format: anndata
batch_key: louvain
name: value
find_cluster.h5
value
Test-2 input_obj_file: find_cluster.h5
input_format: anndata
output_format: anndata
name: value
find_cluster.h5
value