| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpSift_caseControl/4.3+t.galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpSift_caseControl/4.0.0 |
| snpSift_caseControl |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| snpsift | 4.3.1t | package |
| coreutils | 8.25 | package |
| perl | 5.26 | package |
| Additional information about this tool |
SnpSift -Xmx1G caseControl -q
#if $name.strip():
-name '$name'
#end if
#if $ctrl.ctrl_src == 'caseString':
'$ctrl.caseControlStr'
#else
-tfam '$ctrl.tfam'
#end if
'$input' > '$output'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: test.private.01.vcf ctrl|caseControlStr: -- ctrl|ctrl_src: caseString |
name: value |
test.private.01.vcf value |
| Test-2 |
input: test.private.02.vcf ctrl|caseControlStr: -- ctrl|ctrl_src: caseString |
name: value |
test.private.02.vcf value |
| Test-3 |
input: test.private.02.vcf ctrl|caseControlStr: -+ ctrl|ctrl_src: caseString name: |
name: value |
test.private.02.vcf value |