Repository revision
6:2b3e65a4252f

Repository 'snpsift'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/snpsift

SnpSift Annotate tool metadata
Miscellaneous
SNPs from dbSnp
snpSift_annotate
toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpSift_annotate/4.3+t.galaxy1
4.3+t.galaxy1
SnpSift dbnsfp 2>&1|head -n 1
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpSift_annotate/4.3+t.galaxy1 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpSift_annotate/4.0.0
snpSift_annotate
Requirements (dependencies defined in the <requirements> tag set)
name version type
snpsift 4.3.1t package
coreutils 8.25 package
perl 5.26 package
Functional tests
name inputs outputs required files
Test-1 annotate|no_info:
input: annotate_1.vcf
dbSnp: db_test_1.vcf
attributes: name
annotate_1.vcf
db_test_1.vcf
name
Test-2 annotate|no_info:
input: annotate_1.vcf
dbSnp: db_test_1.vcf
annotate|info_ids: dbSNPBuildID
attributes: name
annotate_1.vcf
db_test_1.vcf
name
Test-3 annotate|no_info: -noInfo
input: annotate_1.vcf
dbSnp: db_test_1.vcf
attributes: name
annotate_1.vcf
db_test_1.vcf
name