Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpSift_extractFields/4.3+t.galaxy0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpSift_extractFields/4.1.0 |
snpSift_extractFields |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
snpsift | 4.3.1t | package |
coreutils | 8.25 | package |
perl | 5.26 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
input: test_rmInfo.vcf extract: CHROM POS REF ALT EFF[*].EFFECT |
attributes: name |
test_rmInfo.vcf name |
Test-2 |
input: test_rmInfo.vcf extract: CHROM POS REF ALT EFF[*].EFFECT separator: , |
attributes: name |
test_rmInfo.vcf name |
Test-3 |
input: extFields_test3_in.vcf one_effect_per_line: True extract: CHROM POS ID REF ALT FILTER ANN[*].EFFECT |
attributes: name |
extFields_test3_in.vcf name |