Repository revision
6:2b3e65a4252f

Repository 'snpsift'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/snpsift

SnpSift Extract Fields tool metadata
Miscellaneous
from a VCF file into a tabular file
snpSift_extractFields
toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpSift_extractFields/4.3+t.galaxy0
4.3+t.galaxy0
SnpSift dbnsfp 2>&1|head -n 1
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpSift_extractFields/4.3+t.galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpSift_extractFields/4.1.0
snpSift_extractFields
Requirements (dependencies defined in the <requirements> tag set)
name version type
snpsift 4.3.1t package
coreutils 8.25 package
perl 5.26 package
Functional tests
name inputs outputs required files
Test-1 input: test_rmInfo.vcf
extract: CHROM POS REF ALT EFF[*].EFFECT
attributes: name
test_rmInfo.vcf
name
Test-2 input: test_rmInfo.vcf
extract: CHROM POS REF ALT EFF[*].EFFECT
separator: ,
attributes: name
test_rmInfo.vcf
name
Test-3 input: extFields_test3_in.vcf
one_effect_per_line: True
extract: CHROM POS ID REF ALT FILTER ANN[*].EFFECT
attributes: name
extFields_test3_in.vcf
name