| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/yqiancolumbia/ctk/Extract genomic DNA 1/2.2.3 (this tool) |
| Extract genomic DNA 1 |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| ucsc_tools | not provided | package |
| faToTwoBit | not provided | binary |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
out_format: fasta input: 1.bed seq_source|index_source: cached interpret_features: yes |
out_file1: None |
1.bed |
| Test-2 |
out_format: fasta input: droPer1.bed seq_source|index_source: cached interpret_features: yes |
out_file1: extract_genomic_dna_out2.fasta |
droPer1.bed extract_genomic_dna_out2.fasta |
| Test-3 |
out_format: interval input: 1.bed seq_source|index_source: cached interpret_features: yes |
out_file1: extract_genomic_dna_out3.interval |
1.bed extract_genomic_dna_out3.interval |
| Test-4 |
out_format: interval input: gff_filter_by_attribute_out1.gff seq_source|index_source: cached interpret_features: no |
out_file1: extract_genomic_dna_out4.gff |
gff_filter_by_attribute_out1.gff extract_genomic_dna_out4.gff |
| Test-5 |
out_format: fasta input: gff_filter_by_attribute_out1.gff seq_source|index_source: cached interpret_features: no |
out_file1: extract_genomic_dna_out5.fasta |
gff_filter_by_attribute_out1.gff extract_genomic_dna_out5.fasta |
| Test-6 |
out_format: fasta input: cufflinks_out1.gtf seq_source|index_source: history seq_source|ref_file: tophat_in1.fasta interpret_features: no |
out_file1: extract_genomic_dna_out6.fasta |
cufflinks_out1.gtf tophat_in1.fasta extract_genomic_dna_out6.fasta |
| Test-7 |
out_format: fasta input: cufflinks_out1.gtf seq_source|index_source: history seq_source|ref_file: tophat_in1.fasta interpret_features: yes |
out_file1: extract_genomic_dna_out7.fasta |
cufflinks_out1.gtf tophat_in1.fasta extract_genomic_dna_out7.fasta |